OT tutorial SISS
The objective of this tutorial is that you understand the key observation parameters which you would need to define to propose for ALMA observations (spatial resolution, sensitivity, spectral setup), and play extensively with the parameters and options in the OT so that you feel comfortable enough to craft your own proposal for the next Call for Proposals. This worksheet is intended as a step-by-step guide on how to prepare a mock proposal for the last ALMA Call for Proposals (Cycle 4), by using the ALMA proposal preparation and submission tool ('Observing Tool' or OT). Please feel free to skip any of the proposed steps which you consider not useful or irrelevant for your own training. Many special modes are not described in this basic tutorial. We recommend the OT User Manual for further reference.
Before starting crafting a proposal, you should have an estimate of some characteristics of your source (or at least estimates). These include (but are not limited to):
- The coordinates of the source(s), their velocity towards the observer (in km/s or redshift)
- The extent or size of the emission/absorption regions (Largest angular scale, in arcseconds ")
- Their continuum emission, based on your own models or previous observations (in Jy/beam at a given frequency)
- A list of transitions (lines) of interest observable with ALMA which are present (or expected to be) in the sources, and their estimated contrast (in Jy/beam). You can use the Splatalogue to determine which lines of interest are encompassed within the ALMA bands. Be careful to include the sources' redshift/velocity when you do your line search.
If you already have a preferred source (or a set of sources) in mind, please use it for this tutorial. Or, you can also go ahead and just make up something that is sensible to you.
Now that you know a little more about your source(s), you should decide what are the scientific goals which you want to achieve, and what measurements would allow you to meet your scientific goals. For example, measuring the continuum distribution with a spatial resolution of 0.5". Or obtain a 10 sigma detection of HCN. Or both. The measurements must be achievable within the capabilities offered by ALMA. We will here assume that you are proposing for a Cycle 4 project, for which capabilities are listed here.
You should in particular decide:
- The spatial resolution do you want to reach
- The signal to noise do you want to achieve (on a line detection or on the continuum detection)
- The frequency range(s) which you want to observe.
- For continuum observations, the choice of frequency is usually driven by the optimal compromise between signal to noise and spatial resolution. You can play with the continuum reference frequency in the OT to determine which is the best option depending on your goal.
- For line observations, this choice is driven by the sky frequencies of the lines would be the most suited for your scientific goal (based on your own models, previous publications, line parameters from Splatalogue)
- The maximal spatial scale which you want to be able to retrieve
It is very likely that will go back and forth and modify your original goals while preparing the proposal, to satisfy constraints on ALMA observational setups, or optimize the signal to noise.
Starting your proposal in the OT
Now you can open the OT to prepare your proposal
- type ALMA-OT.sh in a terminal
- select 'Create a new proposal' in the pop-up window. You will see a tree structure on the left panel of the OT display, which describes the structure of the proposal.
- click on 'Proposal' in the tree structure
- on the main panel, write some general information on the proposal (Title, Abstract, Proposal Type, ...).
Determine the science goals
An ALMA proposal is composed of one or several science goals (SG). In practice, each SG (or pseudo-SG) groups observations with a single receiver and correlator/receiver setup (except for spectral scan mode) of sources which are sufficiently nearby in the sky (~<10 degrees apart) to be observed with the same phase calibraton. However, a single science goal can be used with several arrays or configurations (for example, ACA and 12-m array, or extended 12-m and compact 12-m configurations). The telescope observation instructions (scheduling blocks or SBs) are produced based on the SGs inputs.
- Create one (or several) scientific goals by clicking on the 'target' button on the task bar of the OT ('New phase 1 science goal')
- In the project tree, click on the newly created SG. You will see that the SG is divided in 6 sections (General, Field, Spectral, Calibration, Control, Justification)
- In the general section of the SG, give a distinctive name to the science goal
- The next sections will guide you on how to define each section (panel) of the SG
Field panel (source definition)
- In the tree structure click on the 'Field Setup' section of a SG
- In the 'Field Setup' tab, define the name, coordinates and velocity (in km/s or z) of a source, as well as some expected properties
- Note that the expected fluxes densities are defined 'per beam'. This corresponds to the flux encompassed in a resolution unit of the size of your requested angular resolution. For example, if you know that you source is a 4"-wide disk emitting 1 Jy of continuum emission total, the peak flux density per beam of 0.4" will be 10 mJy.
- if your source size may extend beyond half of the primary beam of the telescope (which depends on the observing frequency), or if it is composed of several regions of interest which are more than half of the primary beam away from each other, you will need to observe multiple pointings within your source. In that case:
- you may prefer to define yourself the coordinate of each pointing. Select 'individual pointings' on the 'target type' line. Add as many pointings as desired by clicking on 'Add' at the bottom of the 'Field Center coordinates' panel. You can define the coordinates of each pointing in RA/Dec or offsets from the coordinates defined above. By clicking 'custom mosaic', these pointings will be images as a single mosaic
- you may prefer to set up regular pattern of pointings so as to ideally cover a given area around the source center. Select 'Rectangular field' on the 'target type' line. You will need to define the size of the area in two directions (p and q), and the spacing between pointings. The OT will suggest a number of pointings with the 12-m array, and - if necessary- a number of pointings with the 7m array.
- In the 'Spatial' tab (top of the panel), you can obtain a graphic view of the chosen pointing pattern. You will need to upload a fits file of the source or make an image query.
- If you want to add additional sources to the SG, click on 'Add Source' at the bottom of the panel
- You can flip through the different defined sources by using the tabs at the top of the panel
Spectral Setup panel (receiver and correlator setup)
- In the tree structure on the left panel in the display, click on the 'Spectral Setup' section of a SG
- On the 'Spectral type' line, you need to define if this is a line project (spectral line or spectral scan) or a continuum project
- At any time you can have a graphic view of your spectral setup plotted over the atmospheric absorption spectrum in the 'Spectral' tab on the top of the panel.
- If it is a pure continuum project, you will probably want to maximize the observed bandwidth and use the low resolution-large bandwidth mode of the correlator (Time Division Mode or TDM). Define the receiver band corresponding to your chosen frequency, and you'll be given a default suggested frequency and a correlator setup (4 2-GHz wide spectral windows). You can change the average sky frequency (the corresponding rest frequency is shown below).
- In the case of a line project, you will need to manually define each of the desired spectral windows within the four basebands. Each baseband encompasses at most 2 continuous GHz of the sky spectrum, and can be split in up to 4 spectral windows. There are several rules restricting how basebands and spectral windows within basebands can be setup with respect to each other.
- Add spectral windows in each baseband. To do that in a given baseband, you can either:
- Define the spectral resolution/bandwidth and spectral smoothing of each spectral window. This is mainly driven by the expected width of the observed spectral lines, and how well you need to resolve them. Note that all spectral windows within a baseband must share the same resolution before smoothing.
- Add spectral windows in each baseband. To do that in a given baseband, you can either:
- Select which one of the spectral windows will define the representative frequency for which parameters such as noise, signal to noise and resolution are calculated.
Control and performance panel
The signal to noise which you want to achieve drives the required sensitivity, which necessitates a certain amount of observing time to be reached. Determining the necessary sensitivity is (pretty) simple. You have an idea of the signal to noise you want on your detection (S/N ratio). You have an estimate of the flux density (signal) of the source per beam: for a continuum detection this is the peak continuum flux density. For a line detection, this is the peak flux density averaged over the lowest spectral resolution unit on which you want to achieve a detection (usually, the expected FWHM of the line). The sensitivity (noise) hence corresponds to the flux density per beam divided by the S/N ratio. If the SG combines different lines and continuum detections, each leading to different desired sensitivities, the desired sensitivity for the SG will be defined as the most stringent of these sensitivities.
- In the tree structure on the left panel in the display, click on the 'Control and Performance' section of a SG
- Write down your desired sensitivity (in Jy)
- Write the corresponding bandwidth. For a continuum project, this is the aggregate bandwidth over all spectral windows. For a line project, this is the lowest spectral resolution unit on which you want to achieve the detection.
Now you can define the imaging performance parameters which are necessary to perform your project
- Enter the desired angular resolution and largest angular structure (LAS)
Control and performance panel: needed observing time and arrays
Depending on your desired angular resolution and the maximal characteristic scale which you want to image, you may need to combine observation from different arrays or array configurations to reach your measurement goals. An extended configuration of the main array (the 12-m array, composed of 40 12-m antennas) may provide an excellent spatial resolution, but filter out large scales. You may compensate this by adding observations in a more compact configuration of the 12-m array, or observations by the ACA (Atacama Compact Array, composed of 9 7-m antennas). You will find more information to understand the concept of largest recoverable scale here https://science.nrao.edu/science/videos/largest-angular-scale-and-maximum-recoverable-scale.
You have now defined most of your observational setup. To verify if all parameters are set in a correct way, run a proposal validation (check mark icon on the main task bar). This will indicate if there are some errors in the proposal and parameters need to be changed.
- Click on 'Time Estimate'. You will obtain a breakdown of the estimated time to be spent on source and on calibrators. The time estimate will also tell you if your requested spatial resolution is achievable (otherwise, change it).
If you think that your time request is too high with respect to what you could hope being awarded, there are many ways to drive it down. Remember that the observing time varies as the square of the sensitivity, so a small change in requested sensitivity can significantly change the time request.
- Increase the requested angular resolution. With a larger synthesized beam, the sources' expected flux per beam needs to be increased accordingly. For a constant desired S/N ratio, the corresponding desired sensitivity will be increased.
- Decrease the size of the area to be mapped - hence decreasing the number of necessary pointings.
- Increase the spectral resolution unit for line detection.
- If possible, change the frequency for a frequency offering a better S/N ratio (often at the expense of spatial resolution)
- Eliminate scientific objectives which are too time-expensive
You may need several iterations to hone the most optimal observation parameters. It is also a good idea to regularly run a proposal validation, to verify if all parameters are still consistent and valid.
If this was a real submission [INFORMATIONAL ONLY]
There are additional steps to undertake to transform a mock-up proposal into a real one. Those steps should not be performed during this exercise, but for your information only, here they are:
- add yourself as a PI and collaborators as co-Is. You can only add people who are registered in the ALMA userbase. You can register at almascience.org ('Register' link at the top-right corner)
- attach a pdf of your scientific justification
- generate a pdf file of your proposal. In the Tool section at the top of the window, click on 'Generate a pdf'
- Submit it: In the File section at the top of the window, click on 'Submit'