NGC3256Band3 for CASA 3.3: Difference between revisions

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==ALMA Data Overview==
==ALMA Data Overview==
ALMA Science verification data on NGC3256 in Band 3 were taken in six different datasets over two consecutive nights: April 16-17, 2011.  There are three datasets for April 16th and three for April 17th.  These Band 3 observations utilized all four available basebands, which are associated with four different spectral windows: two in the Upper Sideband (USB) and two in the Lower Sideband (LSB).  The first spectral window is centered on the CO(1-0) emission line in the galaxy NGC 3256 and is our highest frequency spectral window. There is one additional spectral window in the Upper Side Band (USB), and there are two spectral windows in the Lower Side Band (LSB). These additional spectral windows are used to measure the continuum emission in the galaxy, and may contain other emission lines as well.  Each spectral window has a total bandwidth of 2 GHz divided over 128 channels, for a channel width of 15.625 MHz, corresponding to about 40 km/s.  Online Hanning smoothing was applied to the data, which implies that the spectral resolution is twice the channel separation.
ALMA Science verification data on NGC3256 in Band 3 were taken in six different datasets over two consecutive nights: April 16-17, 2011.  There are three datasets for April 16th and three for April 17th.  These Band 3 observations utilized all four available basebands, which are associated with four different spectral windows: two in the Upper Sideband (USB) and two in the Lower Sideband (LSB).  The first spectral window is centered on the CO(1-0) emission line in the galaxy NGC 3256 and is our highest frequency spectral window. There is one additional spectral window in the Upper Side Band (USB), and there are two spectral windows in the Lower Side Band (LSB). These additional spectral windows are used to measure the continuum emission in the galaxy, and may contain other emission lines as well.  Each spectral window has a total bandwidth of 2 GHz divided over 128 channels, for a channel width of 15.625 MHz, corresponding to about 40 km/s.  Online Hanning smoothing was applied to the data, which implies that the spectral resolution is twice the channel separation.  For the antenna configuration that was used during these observation, the angular resolution is expected to be about 6.5".
 
No previous interferometric CO(1-0) observations of this galaxy exist. Casoli et al. (1990) observed the CO(1-0) line with the SEST 15 single dish telescope and were just able to measure a velocity field with 22" resolution. Interferometric observations were first made with the SMA in the CO(2-1) line by Sakamoto, Ho & Peck (2006). Because these observations are taken at higher frequency, the spatial resolution is higher (~2") than that of the ALMA observations shown here, taken in a very compact configuration. After following this guide, the user compare the distribution of the CO(2-1) and (1-0) gas, for example looking at the south-western clump or the north-eastern 'arm', which are apparent in both data sets. Also the global velocity profiles can be compared to check whether the velocity scales are correct.


In this tutorial, we will guide you step-by-step through the reduction of the ALMA science verification data on NGC3256 and its subsequent imaging.  This CASA Guide consists of two parts:
In this tutorial, we will guide you step-by-step through the reduction of the ALMA science verification data on NGC3256 and its subsequent imaging.  This CASA Guide consists of two parts:

Revision as of 21:05, 29 May 2011

Science Target Overview

HST image of NGC3256 (credit: NASA, ESA, the Hubble Heritage Team (STScI/AURA)-ESA/Hubble Collaboration and A. Evans (University of Virginia, Charlottesville/NRAO/Stony Brook University)
SMA map of CO (2–1) emission in the center of NGC 3256 (Sakamoto, Ho & Peck, 2006)

The luminous infrared galaxy NGC 3256 is the brightest galaxy within ~40 Mpc. This galaxy, which is in the later stages of a merger of two gas-rich progenitors, hosts an extreme central starburst that can be seen across a wide range of wavelengths, but emits most strongly in the far infrared (Smith & Harvey 1996). Hubble Space Telescope optical imaging revealed hundreds of bright young clusters in the galactic center (Trancho et al. 2007). There is strong evidence for a superwind in NGC 3256, indicating strong star-burst driven blow-out of the interstellar medium (Heckman et al. 2000). Imaging in the infrared, radio and X-rays has shown that NGC 3256 has two distinct nuclei aligned in the north-south direction and separated by 5 arcsec, or 850 pc on the sky. The southern nucleus is highly obscured, rendering it invisible in the optical .

Because of its proximity and the fact that it is observed nearly face-on, NGC 3256 is an ideal target to study merger-induced starbursts in the local Universe. In fact, NGC 3256 could be regarded as the southern sky equivalent of Arp 220, the archetype of infrared-luminous merging galaxies.

Neutral gas in this galaxy was first studied by English et al (2003), who detected two HI tidal tails that extend up to 50 kpc. High-resolution observations of carbon-monoxide (CO 2-1) in NGC 3256 were made by Sakamoto et al. (2006) using the Submillimeter Array (SMA). This study revealed a large disk of molecular gas (r > 3 kpc) in the center of the merger with a strong gas concentration toward the double nucleus. This gas disk rotates around a point between the two nuclei. Also high-velocity molecular gas was discovered at the galaxy center, with velocities up to 420 km/s offset from the systemic velocity of the galaxy.


ALMA Data Overview

ALMA Science verification data on NGC3256 in Band 3 were taken in six different datasets over two consecutive nights: April 16-17, 2011. There are three datasets for April 16th and three for April 17th. These Band 3 observations utilized all four available basebands, which are associated with four different spectral windows: two in the Upper Sideband (USB) and two in the Lower Sideband (LSB). The first spectral window is centered on the CO(1-0) emission line in the galaxy NGC 3256 and is our highest frequency spectral window. There is one additional spectral window in the Upper Side Band (USB), and there are two spectral windows in the Lower Side Band (LSB). These additional spectral windows are used to measure the continuum emission in the galaxy, and may contain other emission lines as well. Each spectral window has a total bandwidth of 2 GHz divided over 128 channels, for a channel width of 15.625 MHz, corresponding to about 40 km/s. Online Hanning smoothing was applied to the data, which implies that the spectral resolution is twice the channel separation. For the antenna configuration that was used during these observation, the angular resolution is expected to be about 6.5".

No previous interferometric CO(1-0) observations of this galaxy exist. Casoli et al. (1990) observed the CO(1-0) line with the SEST 15 single dish telescope and were just able to measure a velocity field with 22" resolution. Interferometric observations were first made with the SMA in the CO(2-1) line by Sakamoto, Ho & Peck (2006). Because these observations are taken at higher frequency, the spatial resolution is higher (~2") than that of the ALMA observations shown here, taken in a very compact configuration. After following this guide, the user compare the distribution of the CO(2-1) and (1-0) gas, for example looking at the south-western clump or the north-eastern 'arm', which are apparent in both data sets. Also the global velocity profiles can be compared to check whether the velocity scales are correct.

In this tutorial, we will guide you step-by-step through the reduction of the ALMA science verification data on NGC3256 and its subsequent imaging. This CASA Guide consists of two parts:

NGC3256 Band3 - Calibration

NGC3256 Band3 - Imaging

See below for how to obtain the data needed for the tutorial. For a similar tutorial on the reduction of ALMA Band 7 data on TW Hydra, see TWHydraBand7.

Obtaining the Data

You can download the data here:

[LINK]

There are three gzipped tar files, which after unpacking will create three directories:

  • NGC3256_Band3_UnCalibratedMSandTablesForReduction
  • NGC3256_Band3_CalibratedData
  • NGC3256_Band3_ReferenceImages

To complete the NGC3256 Band3 - Calibration section of the tutorial, you will need the data in the first directory: RawDataAndTablesForReduction. Here we provide you with "starter" datasets, where we have taken the raw data in ALMA Science Data Model (ASDM) format and converted them to CASA Measurement Sets (MS). We did this using the importasdm task in CASA. Along with the raw data, we also provide some tables that you will need for the calibration. These include the System Temperature (Tsys) tables, which contain corrections for atmospheric opacity, and Water Vapor Radiometer (WVR) tables, which contain the atmospheric phase corrections determined by the water vapor radiometers on each antenna.

For those wishing to skip the calibration section and proceed to NGC3256 Band3 - Imaging, we also provide the fully-calibrated data in the CalibratedData directory.

Finally, we provide reference images in the ReferenceImages directory for comparison with the results of the NGC3256 Band3 - Imaging section.

The downloads to your local computer will take some time, so you may wish to begin them now.

NOTE: CASA 3.2.0 or later is required to follow this guide.

How to use this Casa Guide

To start the data reduction process from the very beginning, start with the Calibration section: NGC3256 Band3 - Calibration. Once you have completed that section, or if you would like to skip over the calibration process, proceed to NGC3256 Band3 - Imaging.

For both portions of the guide, we will provide you with the full CASA commands needed to carry out each step.

# In CASA
The commands you need to execute will be displayed in regions like this.

Simply copy and paste the commands in order into your CASA terminal. You may also type the commands in by hand if desired, but be mindful of typos. Note that you may need to hit Enter twice in order for the process to start running. Also note that copying and pasting multiple commands at a time may not work, so only copy and paste the contents of one region at a time.

Occasionally we will also show output to the CASA logger, which will be displayed in regions like this.

For a brief introduction to the different ways CASA can be run, see EVLA_Spectral_Line_Calibration_IRC+10216#How_to_Use_This_casaguide page. For further help getting started with CASA, see Getting_Started_in_CASA.