NGC3256Band3 for CASA 3.3: Difference between revisions

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ALMA Science verification data on NGC3256 in Band 3 were taken in six different datasets over two consecutive nights: April 16-17, 2011.  There are three datasets for April 16th and three for April 17th.  These Band 3 observations utilized all four available basebands, which are associated with four different spectral windows: two in the Upper Sideband (USB) and two in the Lower Sideband (LSB).  The first spectral window is centered on the CO(1-0) emission line in the galaxy NGC 3256 and is our highest frequency spectral window. There is one additional spectral window in the Upper Side Band (USB), and there are two spectral windows in the Lower Side Band (LSB). These additional spectral windows are used to measure the continuum emission in the galaxy, and may contain other emission lines as well.  Each spectral window has a total bandwidth of 2 GHz divided over 128 channels, for a channel width of 15.625 MHz, corresponding to about 40 km/s.  Online Hanning smoothing was applied to the data, which implies that the spectral resolution is twice the channel separation.
ALMA Science verification data on NGC3256 in Band 3 were taken in six different datasets over two consecutive nights: April 16-17, 2011.  There are three datasets for April 16th and three for April 17th.  These Band 3 observations utilized all four available basebands, which are associated with four different spectral windows: two in the Upper Sideband (USB) and two in the Lower Sideband (LSB).  The first spectral window is centered on the CO(1-0) emission line in the galaxy NGC 3256 and is our highest frequency spectral window. There is one additional spectral window in the Upper Side Band (USB), and there are two spectral windows in the Lower Side Band (LSB). These additional spectral windows are used to measure the continuum emission in the galaxy, and may contain other emission lines as well.  Each spectral window has a total bandwidth of 2 GHz divided over 128 channels, for a channel width of 15.625 MHz, corresponding to about 40 km/s.  Online Hanning smoothing was applied to the data, which implies that the spectral resolution is twice the channel separation.


In this tutorial, we will guide you step-by-step through the reduction of the ALMA science verification data on NGC3256 and its subsequent imaging.  For a similar tutorial on the reduction of ALMA Band 7 data on TW Hydra, see [[TWHydraBand7]].
In this tutorial, we will guide you step-by-step through the reduction of the ALMA science verification data on NGC3256 and its subsequent imaging.  This CASA Guide consists of two parts:
 
==How to use this Casa Guide==
 
This CASA Guide consists of two parts:  


[[NGC3256 Band3 - Calibration]]
[[NGC3256 Band3 - Calibration]]
Line 17: Line 13:
[[NGC3256 Band3 - Imaging]]
[[NGC3256 Band3 - Imaging]]


To start the data reduction process from the raw data, begin with the Calibration section: [[NGC3256 Band3 - Calibration]].  Once you have completed that section, or if you would like to skip over the calibration process, proceed to [[NGC3256 Band3 - Imaging]].
See below for how to obtain the data needed for the tutorial.  For a similar tutorial on the reduction of ALMA Band 7 data on TW Hydra, see [[TWHydraBand7]].
 
For both portions of the guide, we will provide you with the full CASA commands needed to carry out each step.  Simply copy and paste the commands into your CASA terminal.  For a brief introduction to the different ways CASA can be run, see [[EVLA_Spectral_Line_Calibration_IRC%2B10216#How_to_Use_This_casaguide]] page. For further help getting started with CASA, see [[Getting_Started_in_CASA]]. 


==Obtaining the Data==
==Obtaining the Data==
====Raw Data====
Here we provide you with "starter" datasets, where we have taken the raw data in ALMA Science Data Model (ASDM) format and converted them to CASA Measurement Sets (MS).  We did this using the {{importasdm}} task in CASA. 
Along with the Measurement Sets, we also provide some tables that you will need for the calibration.  These include the System Temperature (Tsys) tables, which contain corrections for atmospheric opacity, and Water Vapor Radiometer (WVR) tables, which contain the atmospheric phase corrections determined by the water vapor radiometers on each antenna. 


You can download the data here:
You can download the data here:
Line 31: Line 21:
[LINK]
[LINK]


Once the download has finished, unpack the file:
This will create three directories:
<source lang="bash">
 
# In a terminal outside CASA
RawDataAndTablesForReduction
tar -xvzf RawDataAndTablesForReduction.tgz
 
</source>
CalibratedData
 
ReferenceImages
 
To complete the [[NGC3256 Band3 - Calibration]] section of the tutorial, you will need the data in the first directory: RawDataAndTablesForReduction.  Here we provide you with "starter" datasets, where we have taken the raw data in ALMA Science Data Model (ASDM) format and converted them to CASA Measurement Sets (MS).  We did this using the {{importasdm}} task in CASA.  Along with the raw data, we also provide some tables that you will need for the calibration.  These include the System Temperature (Tsys) tables, which contain corrections for atmospheric opacity, and Water Vapor Radiometer (WVR) tables, which contain the atmospheric phase corrections determined by the water vapor radiometers on each antenna. 
 
For those wishing to skip the calibration section and proceed to [[NGC3256 Band3 - Imaging]], we also provide the fully-calibrated data in the CalibratedData directory.
 
Finally, we provide reference images in the ReferenceImages directory for comparison with the results of the [[NGC3256 Band3 - Imaging]] section.


====Calibrated Data====
The downloads to your local computer will take some time, so you may wish to begin them now. 


For those wishing to skip the calibration section, we also provide the fully-calibrated data on the science target. 
==How to use this Casa Guide==


You can download the data here:
To start the data reduction process from the very beginning, start with the Calibration section: [[NGC3256 Band3 - Calibration]].  Once you have completed that section, or if you would like to skip over the calibration process, proceed to [[NGC3256 Band3 - Imaging]].


[LINK]
For both portions of the guide, we will provide you with the full CASA commands needed to carry out each step. 


Once the download has finished, unpack the file:
<source lang="python">
<source lang="bash">
# In CASA
# In a terminal outside CASA
The CASA commands will be displayed in yellow boxes, like this.
tar -xvzf CalibratedData.tgz
</source>
</source>
Simply copy and paste the commands in order into your CASA terminal.  You may also type the commands in by hand if desired, but be mindful of typos.  Note that you may need to hit Enter twice in order for the process to start running.  Also note that copying and pasting multiple commands at a time may not work, so only copy and paste the contents of one yellow box at a time. 
For a brief introduction to the different ways CASA can be run, see [[EVLA_Spectral_Line_Calibration_IRC%2B10216#How_to_Use_This_casaguide]] page.  For further help getting started with CASA, see [[Getting_Started_in_CASA]].

Revision as of 15:59, 25 May 2011

Science Target Overview

HST image of NGC3256 (credit: NASA, ESA, the Hubble Heritage Team (STScI/AURA)-ESA/Hubble Collaboration and A. Evans (University of Virginia, Charlottesville/NRAO/Stony Brook University))

[To be written by Eric]

ALMA Data Overview

ALMA Science verification data on NGC3256 in Band 3 were taken in six different datasets over two consecutive nights: April 16-17, 2011. There are three datasets for April 16th and three for April 17th. These Band 3 observations utilized all four available basebands, which are associated with four different spectral windows: two in the Upper Sideband (USB) and two in the Lower Sideband (LSB). The first spectral window is centered on the CO(1-0) emission line in the galaxy NGC 3256 and is our highest frequency spectral window. There is one additional spectral window in the Upper Side Band (USB), and there are two spectral windows in the Lower Side Band (LSB). These additional spectral windows are used to measure the continuum emission in the galaxy, and may contain other emission lines as well. Each spectral window has a total bandwidth of 2 GHz divided over 128 channels, for a channel width of 15.625 MHz, corresponding to about 40 km/s. Online Hanning smoothing was applied to the data, which implies that the spectral resolution is twice the channel separation.

In this tutorial, we will guide you step-by-step through the reduction of the ALMA science verification data on NGC3256 and its subsequent imaging. This CASA Guide consists of two parts:

NGC3256 Band3 - Calibration

NGC3256 Band3 - Imaging

See below for how to obtain the data needed for the tutorial. For a similar tutorial on the reduction of ALMA Band 7 data on TW Hydra, see TWHydraBand7.

Obtaining the Data

You can download the data here:

[LINK]

This will create three directories:

RawDataAndTablesForReduction

CalibratedData

ReferenceImages

To complete the NGC3256 Band3 - Calibration section of the tutorial, you will need the data in the first directory: RawDataAndTablesForReduction. Here we provide you with "starter" datasets, where we have taken the raw data in ALMA Science Data Model (ASDM) format and converted them to CASA Measurement Sets (MS). We did this using the importasdm task in CASA. Along with the raw data, we also provide some tables that you will need for the calibration. These include the System Temperature (Tsys) tables, which contain corrections for atmospheric opacity, and Water Vapor Radiometer (WVR) tables, which contain the atmospheric phase corrections determined by the water vapor radiometers on each antenna.

For those wishing to skip the calibration section and proceed to NGC3256 Band3 - Imaging, we also provide the fully-calibrated data in the CalibratedData directory.

Finally, we provide reference images in the ReferenceImages directory for comparison with the results of the NGC3256 Band3 - Imaging section.

The downloads to your local computer will take some time, so you may wish to begin them now.

How to use this Casa Guide

To start the data reduction process from the very beginning, start with the Calibration section: NGC3256 Band3 - Calibration. Once you have completed that section, or if you would like to skip over the calibration process, proceed to NGC3256 Band3 - Imaging.

For both portions of the guide, we will provide you with the full CASA commands needed to carry out each step.

# In CASA
The CASA commands will be displayed in yellow boxes, like this.

Simply copy and paste the commands in order into your CASA terminal. You may also type the commands in by hand if desired, but be mindful of typos. Note that you may need to hit Enter twice in order for the process to start running. Also note that copying and pasting multiple commands at a time may not work, so only copy and paste the contents of one yellow box at a time.

For a brief introduction to the different ways CASA can be run, see EVLA_Spectral_Line_Calibration_IRC+10216#How_to_Use_This_casaguide page. For further help getting started with CASA, see Getting_Started_in_CASA.